These verses you're citing come from John's Gospel and Paul's letters, written decades after Jesus's life and reflecting later theological developments rather than Jesus's own words and teachings. The Gospel of John in particular (written 60-70 years after Jesus's death) presents a very different picture of Jesus than we find in the earlier Synoptic Gospels. When studying the historical Jesus, scholars focus on our earliest sources - Mark, Q, and the authentic Pauline letters. Additionally, 2 Timothy wasn't actually written by Paul but by a later follower, and its claim about "all Scripture" would have referred only to the Hebrew Bible, since the New Testament didn't exist yet. We can deeply value the Bible without treating it as an object of worship or believing every word is literally true.